A distal locus element mediates IFN-γ priming of lipopolysaccharide-stimulated TNF gene expression

Cell Rep. 2014 Dec 11;9(5):1718-1728. doi: 10.1016/j.celrep.2014.11.011. Epub 2014 Dec 4.

Abstract

Interferon γ (IFN-γ) priming sensitizes monocytes and macrophages to lipopolysaccharide (LPS) stimulation, resulting in augmented expression of a set of genes including TNF. Here, we demonstrate that IFN-γ priming of LPS-stimulated TNF transcription requires a distal TNF/LT locus element 8 kb upstream of the TNF transcription start site (hHS-8). IFN-γ stimulation leads to increased DNase I accessibility of hHS-8 and its recruitment of interferon regulatory factor 1 (IRF1), and subsequent LPS stimulation enhances H3K27 acetylation and induces enhancer RNA synthesis at hHS-8. Ablation of IRF1 or targeting the hHS-8 IRF1 binding site in vivo with Cas9 linked to the KRAB repressive domain abolishes IFN-γ priming, but does not affect LPS induction of the gene. Thus, IFN-γ poises a distal enhancer in the TNF/LT locus by chromatin remodeling and IRF1 recruitment, which then drives enhanced TNF gene expression in response to a secondary toll-like receptor (TLR) stimulus.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acetylation
  • Base Sequence
  • Cell Line
  • Conserved Sequence
  • Gene Expression / immunology
  • Genetic Loci
  • Histones / metabolism
  • Humans
  • Interferon Regulatory Factor-1 / metabolism
  • Interferon-gamma / physiology*
  • Lipopolysaccharides / pharmacology*
  • Molecular Sequence Data
  • Protein Binding
  • Protein Processing, Post-Translational
  • Transcriptional Activation / immunology*
  • Tumor Necrosis Factor-alpha / genetics*
  • Tumor Necrosis Factor-alpha / metabolism
  • Up-Regulation

Substances

  • Histones
  • IRF1 protein, human
  • Interferon Regulatory Factor-1
  • Lipopolysaccharides
  • TNF protein, human
  • Tumor Necrosis Factor-alpha
  • Interferon-gamma