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Bioinformatics. 2015 Apr 15;31(8):1305-6. doi: 10.1093/bioinformatics/btu808. Epub 2014 Dec 5.

Kablammo: an interactive, web-based BLAST results visualizer.

Author information

1
Department of Ecosystem and Public Health, Faculty of Veterinary Medicine, University of Calgary, Calgary, Alberta, Canada.

Abstract

MOTIVATION:

Kablammo is a web-based application that produces interactive, vector-based visualizations of sequence alignments generated by BLAST. These visualizations can illustrate many features, including shared protein domains, chromosome structural modifications and genome misassembly.

AVAILABILITY AND IMPLEMENTATION:

Kablammo can be used at http://kablammo.wasmuthlab.org. For a local installation, the source code and instructions are available under the MIT license at http://github.com/jwintersinger/kablammo.

CONTACT:

jeff@wintersinger.org.

PMID:
25481007
DOI:
10.1093/bioinformatics/btu808
[Indexed for MEDLINE]

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