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Nucleic Acids Res. 2015 Jan;43(Database issue):D18-22. doi: 10.1093/nar/gku1120. Epub 2014 Dec 3.

The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data.

Author information

1
DDBJ Center, National Institute of Genetics, Shizuoka 411-8540, Japan.
2
National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan.
3
DDBJ Center, National Institute of Genetics, Shizuoka 411-8540, Japan Database Center for Life Science, Chiba 277-0871, Japan.
4
DDBJ Center, National Institute of Genetics, Shizuoka 411-8540, Japan yanakamu@nig.ac.jp.

Abstract

The DNA Data Bank of Japan Center (DDBJ Center; http://www.ddbj.nig.ac.jp) maintains and provides public archival, retrieval and analytical services for biological information. Since October 2013, DDBJ Center has operated the Japanese Genotype-phenotype Archive (JGA) in collaboration with our partner institute, the National Bioscience Database Center (NBDC) of the Japan Science and Technology Agency. DDBJ Center provides the JGA database system which securely stores genotype and phenotype data collected from individuals whose consent agreements authorize data release only for specific research use. NBDC has established guidelines and policies for sharing human-derived data and reviews data submission and usage requests from researchers. In addition to the JGA project, DDBJ Center develops Semantic Web technologies for data integration and sharing in collaboration with the Database Center for Life Science. This paper describes the overview of the JGA project, updates to the DDBJ databases, and services for data retrieval, analysis and integration.

PMID:
25477381
PMCID:
PMC4383935
DOI:
10.1093/nar/gku1120
[Indexed for MEDLINE]
Free PMC Article

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