Format

Send to

Choose Destination
Nucleic Acids Res. 2015 Jan;43(Database issue):D812-7. doi: 10.1093/nar/gku1073. Epub 2014 Nov 11.

The UCSC Cancer Genomics Browser: update 2015.

Author information

1
Center for Biomolecular Science and Engineering, University of California at Santa Cruz, Santa Cruz, CA 95064, USA mary@soe.ucsc.edu.
2
Center for Biomolecular Science and Engineering, University of California at Santa Cruz, Santa Cruz, CA 95064, USA.
3
Howard Hughes Medical Institute, University of California at Santa Cruz, Santa Cruz, CA, USA.

Abstract

The UCSC Cancer Genomics Browser (https://genome-cancer.ucsc.edu/) is a web-based application that integrates relevant data, analysis and visualization, allowing users to easily discover and share their research observations. Users can explore the relationship between genomic alterations and phenotypes by visualizing various -omic data alongside clinical and phenotypic features, such as age, subtype classifications and genomic biomarkers. The Cancer Genomics Browser currently hosts 575 public datasets from genome-wide analyses of over 227,000 samples, including datasets from TCGA, CCLE, Connectivity Map and TARGET. Users can download and upload clinical data, generate Kaplan-Meier plots dynamically, export data directly to Galaxy for analysis, plus generate URL bookmarks of specific views of the data to share with others.

PMID:
25392408
PMCID:
PMC4383911
DOI:
10.1093/nar/gku1073
[Indexed for MEDLINE]
Free PMC Article

Supplemental Content

Full text links

Icon for Silverchair Information Systems Icon for PubMed Central
Loading ...
Support Center