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Bioinformatics. 2015 Mar 15;31(6):963-5. doi: 10.1093/bioinformatics/btu737. Epub 2014 Nov 10.

What handedness and angles between helices has the studied three-helical protein domain?

Author information

1
Institute of Protein Research and Institute of Mathematical Problems of Biology, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia.
2
Institute of Protein Research and Institute of Mathematical Problems of Biology, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia Institute of Protein Research and Institute of Mathematical Problems of Biology, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia.

Abstract

We have created a new server FoldHandedness. Using this server it is possible: (i) to define the regions of helices from two issues (from the PDB file and using the last version of the DSSP program), (ii) to determine the handedness for any chosen three helices and (iii) to calculate the angle and sign between the chosen pairs of the helices for large proteins and complexes of proteins with DNA or RNA.

PMID:
25388147
DOI:
10.1093/bioinformatics/btu737
[Indexed for MEDLINE]

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