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Nucleic Acids Res. 2015 Jan;43(Database issue):D387-91. doi: 10.1093/nar/gku966. Epub 2014 Oct 16.

Platinum: a database of experimentally measured effects of mutations on structurally defined protein-ligand complexes.

Author information

1
Department of Biochemistry, University of Cambridge, Cambridge CB2 1GA, UK dpires@dcc.ufmg.br.
2
Department of Biochemistry, University of Cambridge, Cambridge CB2 1GA, UK.
3
Department of Biochemistry, University of Cambridge, Cambridge CB2 1GA, UK dascher@svi.edu.au.

Abstract

Drug resistance is a major challenge for the treatment of many diseases and a significant concern throughout the drug development process. The ability to understand and predict the effects of mutations on protein-ligand affinities and their roles in the emergence of resistance would significantly aid treatment and drug design strategies. In order to study and understand the impacts of missense mutations on the interaction of ligands with the proteome, we have developed Platinum (http://structure.bioc.cam.ac.uk/platinum). This manually curated, literature-derived database, comprising over 1000 mutations, associates for the first time experimental information on changes in affinity with three-dimensional structures of protein-ligand complexes. To minimize differences arising from experimental techniques and to directly compare binding affinities, Platinum considers only changes measured by the same group and with the same amino-acid sequence used for structure determination, providing a direct link between protein structure, how a ligand binds and how mutations alter the affinity of the ligand of the protein. We believe Platinum will be an invaluable resource for understanding the effects of mutations that give rise to drug resistance, a major problem emerging in pandemics including those caused by the influenza virus, in infectious diseases such as tuberculosis, in cancer and in many other life-threatening illnesses.

PMID:
25324307
PMCID:
PMC4384026
DOI:
10.1093/nar/gku966
[Indexed for MEDLINE]
Free PMC Article

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