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ACS Synth Biol. 2014 Sep 19;3(9):676-85. doi: 10.1021/sb500222z. Epub 2014 Jul 7.

Cellular signaling circuits interfaced with synthetic, post-translational, negating Boolean logic devices.

Author information

1
Department of Biomedical Engineering, §Department of Cell Biology, and ⊥Center for Cell Dynamics, Johns Hopkins University School of Medicine , Baltimore, Maryland 21205, United States.

Abstract

A negating functionality is fundamental to information processing of logic circuits within cells and computers. Aiming to adapt unutilized electronic concepts to the interrogation of signaling circuits in cells, we first took a bottom-up strategy whereby we created protein-based devices that perform negating Boolean logic operations such as NOT, NOR, NAND, and N-IMPLY. These devices function in living cells within a minute by precisely commanding the localization of an activator molecule among three subcellular spaces. We networked these synthetic gates to an endogenous signaling circuit and devised a physiological output. In search of logic functions in signal transduction, we next took a top-down approach and computationally screened 108 signaling pathways to identify commonalities and differences between these biological pathways and electronic circuits. This combination of synthetic and systems approaches will guide us in developing foundations for deconstruction of intricate cell signaling, as well as construction of biomolecular computers.

KEYWORDS:

Rac; chemically induced dimerization; membrane ruffling; negation; signaling pathway; synthetic Boolean logic

PMID:
25000210
PMCID:
PMC4169742
DOI:
10.1021/sb500222z
[Indexed for MEDLINE]
Free PMC Article

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