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J Biol Chem. 2014 Aug 1;289(31):21651-62. doi: 10.1074/jbc.M114.574061. Epub 2014 Jun 16.

The role of a novel auxiliary pocket in bacterial phenylalanyl-tRNA synthetase druggability.

Author information

1
From the Departments of Biosciences and.
2
the Department of Structure and Biophysics, Discovery Sciences, AstraZeneca R&D Boston, Waltham, Massachusetts 02451.
3
Chemistry, Infection Innovative Medicines Unit and.
4
From the Departments of Biosciences and Ed.Buurman@astrazeneca.com.

Abstract

The antimicrobial activity of phenyl-thiazolylurea-sulfonamides against Staphylococcus aureus PheRS are dependent upon phenylalanine levels in the extracellular fluids. Inhibitor efficacy in animal models of infection is substantially diminished by dietary phenylalanine intake, thereby reducing the perceived clinical utility of this inhibitor class. The search for novel antibacterial compounds against Gram-negative pathogens led to a re-evaluation of this phenomenon, which is shown here to be unique to S. aureus. Inhibition of macromolecular syntheses and characterization of novel resistance mutations in Escherichia coli demonstrate that antimicrobial activity of phenyl-thiazolylurea-sulfonamides is mediated by PheRS inhibition, validating this enzyme as a viable drug discovery target for Gram-negative pathogens. A search for novel inhibitors of PheRS yielded three novel chemical starting points. NMR studies were used to confirm direct target engagement for phenylalanine-competitive hits. The crystallographic structure of Pseudomonas aeruginosa PheRS defined the binding modes of these hits and revealed an auxiliary hydrophobic pocket that is positioned adjacent to the phenylalanine binding site. Three viable inhibitor-resistant mutants were mapped to this pocket, suggesting that this region is a potential liability for drug discovery.

KEYWORDS:

Antibiotic Action; Auxiliary Pocket; Bacteria; Crystal Structure; Drug Discovery; Drug Resistance; Escherichia coli (E. coli); Phenylalanyl-tRNA Synthetase; Pseudomonas aeruginosa (P. aeruginosa); Unnatural Amino Acid

PMID:
24936059
PMCID:
PMC4118124
DOI:
10.1074/jbc.M114.574061
[Indexed for MEDLINE]
Free PMC Article

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