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Bioinformatics. 2014 Oct;30(19):2808-10. doi: 10.1093/bioinformatics/btu379. Epub 2014 Jun 5.

Sushi.R: flexible, quantitative and integrative genomic visualizations for publication-quality multi-panel figures.

Author information

1
Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.

Abstract

Interpretation and communication of genomic data require flexible and quantitative tools to analyze and visualize diverse data types, and yet, a comprehensive tool to display all common genomic data types in publication quality figures does not exist to date. To address this shortcoming, we present Sushi.R, an R/Bioconductor package that allows flexible integration of genomic visualizations into highly customizable, publication-ready, multi-panel figures from common genomic data formats including Browser Extensible Data (BED), bedGraph and Browser Extensible Data Paired-End (BEDPE). Sushi.R is open source and made publicly available through GitHub (https://github.com/dphansti/Sushi) and Bioconductor (http://bioconductor.org/packages/release/bioc/html/Sushi.html).

PMID:
24903420
PMCID:
PMC4173017
DOI:
10.1093/bioinformatics/btu379
[Indexed for MEDLINE]
Free PMC Article

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