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Bioinformatics. 2014 Aug 15;30(16):2389-90. doi: 10.1093/bioinformatics/btu202. Epub 2014 Apr 25.

ThunderSTORM: a comprehensive ImageJ plug-in for PALM and STORM data analysis and super-resolution imaging.

Author information

1
Institute of Cellular Biology and Pathology, First Faculty of Medicine, Charles University in Prague, Prague 12800, Czech Republic.

Abstract

ThunderSTORM is an open-source, interactive and modular plug-in for ImageJ designed for automated processing, analysis and visualization of data acquired by single-molecule localization microscopy methods such as photo-activated localization microscopy and stochastic optical reconstruction microscopy. ThunderSTORM offers an extensive collection of processing and post-processing methods so that users can easily adapt the process of analysis to their data. ThunderSTORM also offers a set of tools for creation of simulated data and quantitative performance evaluation of localization algorithms using Monte Carlo simulations.

AVAILABILITY AND IMPLEMENTATION:

ThunderSTORM and the online documentation are both freely accessible at https://code.google.com/p/thunder-storm/.

PMID:
24771516
PMCID:
PMC4207427
DOI:
10.1093/bioinformatics/btu202
[Indexed for MEDLINE]
Free PMC Article

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