A coumarin-labeled vinyl sulfone as tripeptidomimetic activity-based probe for cysteine cathepsins

Chembiochem. 2014 May 5;15(7):955-9. doi: 10.1002/cbic.201300806. Epub 2014 Mar 19.

Abstract

A coumarin-tetrahydroquinoline hydride 8 was synthesized as a chemical tool for fluorescent labeling. The rigidified tricyclic coumarin structure was chosen for its suitable fluorescence properties. The connection of 8 with a vinyl sulfone building block was accomplished by convergent synthesis thereby leading to the coumarin-based, tripeptidomimetic activity-based probe 10, containing a Gly-Phe-Gly motif. Probe 10 was evaluated as inactivator of the therapeutically relevant human cysteine cathepsins S, L, K, and B: it showed particularly strong inactivation of cathepsin S. The detection of recombinant and native cathepsin S was demonstrated by applying 10 to in-gel fluorescence imaging.

Keywords: activity-based probes; cathepsins; coumarins; fluorescent probes; inhibitors; peptidyl vinyl sulfones.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites
  • Catalytic Domain
  • Cathepsins / chemistry
  • Cathepsins / metabolism*
  • Coumarins / chemical synthesis
  • Coumarins / chemistry*
  • Dipeptides / chemical synthesis
  • Dipeptides / chemistry
  • Electrophoresis, Polyacrylamide Gel
  • Fluorescent Dyes / chemical synthesis
  • Fluorescent Dyes / chemistry*
  • Humans
  • Isoenzymes / chemistry
  • Isoenzymes / metabolism
  • Molecular Docking Simulation
  • Quinolines / chemistry
  • Sulfones / chemistry*

Substances

  • Coumarins
  • Dipeptides
  • Fluorescent Dyes
  • Isoenzymes
  • Quinolines
  • Sulfones
  • methyl 2-oxo-9-(2-oxo-2-(1-oxo-3-phenyl-1-(3-(phenylsulfonyl)allylamino)propan-2-ylamino)ethyl)-6,7,8,9-tetrahydro-2H-pyrano(3,2-g)quinoline-3-carboxylate
  • divinyl sulfone
  • coumarin
  • 1,2,3,4-tetrahydroquinoline
  • Cathepsins
  • cathepsin S