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Mol Biol Evol. 2014 Jun;31(6):1581-92. doi: 10.1093/molbev/msu081. Epub 2014 Feb 23.

A comprehensive, high-resolution map of a gene's fitness landscape.

Author information

1
Department of Chemical and Biomolecular Engineering, Johns Hopkins University.
2
Department of Chemical and Biomolecular Engineering, Johns Hopkins University oster@jhu.edu.

Abstract

Mutations are central to evolution, providing the genetic variation upon which selection acts. A mutation's effect on the suitability of a gene to perform a particular function (gene fitness) can be positive, negative, or neutral. Knowledge of the distribution of fitness effects (DFE) of mutations is fundamental for understanding evolutionary dynamics, molecular-level genetic variation, complex genetic disease, the accumulation of deleterious mutations, and the molecular clock. We present comprehensive DFEs for point and codon mutants of the Escherichia coli TEM-1 β-lactamase gene and missense mutations in the TEM-1 protein. These DFEs provide insight into the inherent benefits of the genetic code's architecture, support for the hypothesis that mRNA stability dictates codon usage at the beginning of genes, an extensive framework for understanding protein mutational tolerance, and evidence that mutational effects on protein thermodynamic stability shape the DFE. Contrary to prevailing expectations, we find that deleterious effects of mutation primarily arise from a decrease in specific protein activity and not cellular protein levels.

KEYWORDS:

beta-lactamase; fitness landscape; protein evolution

PMID:
24567513
PMCID:
PMC4032126
DOI:
10.1093/molbev/msu081
[Indexed for MEDLINE]
Free PMC Article

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