Androgen receptor uses relaxed response element stringency for selective chromatin binding and transcriptional regulation in vivo

Nucleic Acids Res. 2014 Apr;42(7):4230-40. doi: 10.1093/nar/gkt1401. Epub 2014 Jan 22.

Abstract

The DNA-binding domains (DBDs) of class I steroid receptors-androgen, glucocorticoid, progesterone and mineralocorticoid receptors-recognize a similar cis-element, an inverted repeat of 5'-AGAACA-3' with a 3-nt spacer. However, these receptors regulate transcription programs that are largely receptor-specific. To address the role of the DBD in and of itself in ensuring specificity of androgen receptor (AR) binding to chromatin in vivo, we used SPARKI knock-in mice whose AR DBD has the second zinc finger replaced by that of the glucocorticoid receptor. Comparison of AR-binding events in epididymides and prostates of wild-type (wt) and SPARKI mice revealed that AR achieves selective chromatin binding through a less stringent sequence requirement for the 3'-hexamer. In particular, a T at position 12 in the second hexamer is dispensable for wt AR but mandatory for SPARKI AR binding, and only a G at position 11 is highly conserved among wt AR-preferred response elements. Genome-wide AR-binding events agree with the respective transcriptome profiles, in that attenuated AR binding in SPARKI mouse epididymis correlates with blunted androgen response in vivo. Collectively, AR-selective actions in vivo rely on relaxed rather than increased stringency of cis-elements on chromatin. These elements are, in turn, poorly recognized by other class I steroid receptors.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Chromatin / metabolism*
  • Enhancer Elements, Genetic
  • Epididymis / metabolism
  • Gene Expression Regulation*
  • Gene Knock-In Techniques
  • Male
  • Mice
  • Mice, Inbred C57BL
  • Receptors, Androgen / genetics
  • Receptors, Androgen / metabolism*
  • Response Elements*
  • Transcription, Genetic*

Substances

  • Chromatin
  • Receptors, Androgen