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Bioinformatics. 2014 Apr 1;30(7):1036-8. doi: 10.1093/bioinformatics/btt747. Epub 2013 Dec 25.

Assimilating genome-scale metabolic reconstructions with modelBorgifier.

Author information

1
BRAIN Aktiengesellschaft, Microbial Production Technologies, Platform for Quantitative Biology and Sequencing, D-64673 Zwingenberg, Germany.

Abstract

MOTIVATION:

Genome-scale reconstructions and models, as collections of genomic and metabolic information, provide a useful means to compare organisms. Comparison requires that models are similarly notated to pair shared components.

RESULT:

Matching and comparison of genome-scale reconstructions and models are facilitated by modelBorgifier. It reconciles models in light of different annotation schemes, allowing diverse models to become useful for synchronous investigation.

AVAILABILITY AND IMPLEMENTATION:

The modelBorgifier toolbox is freely available at http://www.brain-biotech.de/downloads/modelBorgifier.zip.

PMID:
24371155
DOI:
10.1093/bioinformatics/btt747
[Indexed for MEDLINE]

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