Directed evolution of GH43 β-xylosidase XylBH43 thermal stability and L186 saturation mutagenesis

J Ind Microbiol Biotechnol. 2014 Mar;41(3):489-98. doi: 10.1007/s10295-013-1377-0. Epub 2013 Nov 29.

Abstract

Directed evolution of β-xylosidase XylBH43 using a single round of gene shuffling identified three mutations, R45K, M69P, and L186Y, that affect thermal stability parameter K(t)⁰·⁵ by -1.8 ± 0.1, 1.7 ± 0.3, and 3.2 ± 0.4 °C, respectively. In addition, a cluster of four mutations near hairpin loop-D83 improved K(t)⁰·⁵ by ~3 °C; none of the individual amino acid changes measurably affect K(t)⁰·⁵. Saturation mutagenesis of L186 identified the variant L186K as having the most improved K(t)⁰·⁵ value, by 8.1 ± 0.3 °C. The L186Y mutation was found to be additive, resulting in K(t)⁰·⁵ increasing by up to 8.8 ± 0.3 °C when several beneficial mutations were combined. While k cat of xylobiose and 4-nitrophenyl-β-D-xylopyranoside were found to be depressed from 8 to 83 % in the thermally improved mutants, K(m), K(ss) (substrate inhibition), and K(i) (product inhibition) values generally increased, resulting in lessened substrate and xylose inhibition.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Bacillus / enzymology*
  • Directed Molecular Evolution*
  • Disaccharides / metabolism
  • Enzyme Stability
  • Models, Molecular
  • Molecular Sequence Data
  • Mutagenesis
  • Nitrophenols / metabolism
  • Sequence Alignment
  • Substrate Specificity
  • Xylose / genetics
  • Xylose / metabolism
  • Xylosidases / chemistry
  • Xylosidases / genetics*
  • Xylosidases / metabolism

Substances

  • Disaccharides
  • Nitrophenols
  • 4-nitrophenyl
  • Xylose
  • Xylosidases
  • exo-1,4-beta-D-xylosidase
  • xylobiose