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Proteomics. 2014 Feb;14(2-3):147-52. doi: 10.1002/pmic.201300373.

The chromosome-centric human proteome project at FEBS Congress.

Author information

1
Institute of Biomedical Chemistry, Moscow, Russia; RHUPO, Russian Human Proteome Organization, Moscow, Russia.

Abstract

In the summer of 2013, distinguished global representatives of proteome science gathered to discuss the futuristic visions of the chromosome-centric human proteome project (C-HPP) (Cochairs: Y. K. Paik, G. Omenn; hosted by A. Archakov, Institute of Biomedical Chemistry, Russia) that was broadcast to the annual Federation of European Biochemical Societies Congress (St. Petersburg, Russia, July 10-11, 2013). Technology breakthroughs presented included a new ultra-sensitive Tribrid mass-spectrometer from Thermo and SOMAmers-Slow Off-rate Modified Aptamers (SOMAlogic, USA), a new type of protein capture reagents. Professor Archakov's group introduced the "rectangle" concept of proteome size as a product of proteome width and depth. The discussion on proteome width culminated with the introduction of digital biomarkers-low-copied aberrant proteins that differ from their typical forms by PTMs, alternative splicing, or single amino acid polymorphisms. The aberrant proteoforms, a complement to whole-genome proteomic surveys, were presented as an ultimate goal for the proteomic community.

KEYWORDS:

Digital biomarkers; Human Proteome Project; Proteome depth; Proteome width; Technology

PMID:
24285571
DOI:
10.1002/pmic.201300373
[Indexed for MEDLINE]

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