mBTL binds and inhibits LasR and RhlR, and the primary in vivo target of mBTL is RhlR. (A) LasR activation of expression of rsaL–gfp in E. coli. (B) RhlR activation of expression of rhlA–gfp in E. coli. In each panel, gfp expression in the presence of the cognate autoinducer (100 nM 3OC12–HSL or 20 μM C4–HSL) is set to 100%. mBTL was tested for inhibition at 1 mM. Agonism was examined at 100 nM for LasR and at 20 μM for RhlR. Error bars represent SD of three replicates. (C) SDS/PAGE analysis of whole cell (WC) and soluble (S) extracts from E. coli cultures expressing LasR in the presence of DMSO, 100 μM 3OC12–HSL, or 100 μM mBTL. An uninduced control (UN) is shown for comparison. (D) Same as C with RhlR in the presence of DMSO, 100 μM C4–HSL, or 100 μM mBTL. (E) Hierarchical clustering, heat maps, and the RMS of the fold change (log10) of mBTL-treated (+) or DMSO-treated (−) WT P. aeruginosa, lasR, rhlR, and rhlI mutants. Dendrogram to the left of the map indicates average Euclidean linkage distances between the gene expression profiles. Blue and yellow indicate decreased and increased expression, respectively. Data are the average of three independent biological experiments, one in which the Cy3 and Cy5 dyes were swapped.