Format

Send to

Choose Destination
Bioinformatics. 2013 Dec 15;29(24):3232-4. doi: 10.1093/bioinformatics/btt562. Epub 2013 Sep 26.

INVEX--a web-based tool for integrative visualization of expression data.

Author information

1
Department of Microbiology and Immunology, University of British Columbia, Vancouver, Canada V6T 1Z3, Centre for Microbial Diseases and Immunity Research, University of British Columbia, Vancouver, Canada V6T 1Z4 and Wellcome Trust Sanger Institute, Hinxton CB10 1SA, UK.

Abstract

SUMMARY:

Gene expression or metabolomics data generated from clinical settings are often associated with multiple metadata (i.e. diagnosis, genotype, gender, etc.). It is of great interest to analyze and to visualize the data in these contexts. Here, we introduce INVEX-a novel web-based tool that integrates the server-side capabilities for data analysis with the browse-based technology for data visualization. INVEX has two key features: (i) flexible differential expression analysis for a wide variety of experimental designs; and (ii) interactive visualization within the context of metadata and biological annotations. INVEX has built-in support for gene/metabolite annotation and a fully functional heatmap builder.

AVAILABILITY AND IMPLEMENTATION:

Freely available at http://www.invex.ca.

PMID:
24078684
PMCID:
PMC3842763
DOI:
10.1093/bioinformatics/btt562
[Indexed for MEDLINE]
Free PMC Article

Supplemental Content

Full text links

Icon for Silverchair Information Systems Icon for PubMed Central
Loading ...
Support Center