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Trends Plant Sci. 2014 Jan;19(1):5-9. doi: 10.1016/j.tplants.2013.08.008. Epub 2013 Sep 18.

A unified nomenclature of NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER family members in plants.

Author information

1
Biochimie et Physiologie Moléculaire des Plantes, UMR CNRS/INRA/UM2/SupAgro, Institut de Biologie Intégrative des Plantes 'Claude Grignon', Place Viala, 34060 Montpellier, France.
2
Department of Biology, Center for Genomics and Systems Biology, New York University, 12 Waverly Place, New York, NY 10003, USA.
3
Institute of Genetics and Biophysics 'Adriano Buzzati-Traverso', CNR, Via Pietro Castellino 111, 80131 Naples, Italy.
4
Section of Cell and Developmental Biology, UC San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA.
5
INRA AgroParisTech, UMR1318 Institut Jean-Pierre Bourgin, RD10, 78026 Versailles Cedex, France.
6
Department of Biological Sciences, University of North Texas, 1155 Union Circle #305220, Denton, TX 76203, USA.
7
Departamento de Bioquímica y Biología Molecular, Edificio Severo Ochoa Baja E, Campus de Rabanales, E-14071, Córdoba, Spain.
8
Centre for Sustainable Agriculture, Lancaster Environment Centre, Lancaster University, Lancaster, LA1 4YQ, UK.
9
Division of Plant Sciences, CS Bond Life Sciences Center and Interdisciplinary Plant Group, University of Missouri, Columbia, MO 65211, USA.
10
Universität Würzburg, Julius-von-Sachs-Institut für Biowissenschaften, Lehrstuhl für Molekulare Pflanzenphysiologie und Biophysik, Julius-von-Sachs-Platz 2, 97082 Würzburg, Germany.
11
National Key Laboratory of Plant Molecular Genetics and National Center for Plant Gene Research (Shanghai), Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200032, China.
12
DynaMo Centre of Excellence, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen, Thorvaldsensvej 40, 1871 Frederiksberg C, Denmark.
13
Department of Plant Biology, 315 Jeffords Hall, 63 Carrigan Drive, University of Vermont, Burlington, VT 05405, USA.
14
UMR 1345 Research Institute of Horticulture and Seeds (INRA, Agrocampus-Ouest, University of Angers), SFR 4207 Quasav, 2 Bd Lavoisier, 49045 Angers Cedex, France.
15
Institute of Plant Sciences, University of Bern, Altenbergrain 21, 3013 Bern, Switzerland.
16
RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan.
17
Institute of Molecular Biology, Academia Sinica, Taipei, Taiwan.
18
Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China.
19
Biochimie et Physiologie Moléculaire des Plantes, UMR CNRS/INRA/UM2/SupAgro, Institut de Biologie Intégrative des Plantes 'Claude Grignon', Place Viala, 34060 Montpellier, France. Electronic address: benoit.lacombe@supagro.inra.fr.

Abstract

Members of the plant NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER (NRT1/PTR) family display protein sequence homology with the SLC15/PepT/PTR/POT family of peptide transporters in animals. In comparison to their animal and bacterial counterparts, these plant proteins transport a wide variety of substrates: nitrate, peptides, amino acids, dicarboxylates, glucosinolates, IAA, and ABA. The phylogenetic relationship of the members of the NRT1/PTR family in 31 fully sequenced plant genomes allowed the identification of unambiguous clades, defining eight subfamilies. The phylogenetic tree was used to determine a unified nomenclature of this family named NPF, for NRT1/PTR FAMILY. We propose that the members should be named accordingly: NPFX.Y, where X denotes the subfamily and Y the individual member within the species.

PMID:
24055139
DOI:
10.1016/j.tplants.2013.08.008
[Indexed for MEDLINE]

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