Format

Send to

Choose Destination
See comment in PubMed Commons below
BMC Bioinformatics. 2013 Aug 21;14:253. doi: 10.1186/1471-2105-14-253.

WholeCellViz: data visualization for whole-cell models.

Author information

1
Department of Bioengineering, Stanford University, Stanford, CA 94025, USA. mcovert@stanford.edu.

Abstract

BACKGROUND:

Whole-cell models promise to accelerate biomedical science and engineering. However, discovering new biology from whole-cell models and other high-throughput technologies requires novel tools for exploring and analyzing complex, high-dimensional data.

RESULTS:

We developed WholeCellViz, a web-based software program for visually exploring and analyzing whole-cell simulations. WholeCellViz provides 14 animated visualizations, including metabolic and chromosome maps. These visualizations help researchers analyze model predictions by displaying predictions in their biological context. Furthermore, WholeCellViz enables researchers to compare predictions within and across simulations by allowing users to simultaneously display multiple visualizations.

CONCLUSION:

WholeCellViz was designed to facilitate exploration, analysis, and communication of whole-cell model data. Taken together, WholeCellViz helps researchers use whole-cell model simulations to drive advances in biology and bioengineering.

PMID:
23964998
PMCID:
PMC3765349
DOI:
10.1186/1471-2105-14-253
[Indexed for MEDLINE]
Free PMC Article
PubMed Commons home

PubMed Commons

0 comments
How to join PubMed Commons

    Supplemental Content

    Full text links

    Icon for PubMed Central
    Loading ...
    Support Center