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J Math Biol. 2014 Sep;69(3):687-735. doi: 10.1007/s00285-013-0711-5. Epub 2013 Aug 6.

Method of conditional moments (MCM) for the Chemical Master Equation: a unified framework for the method of moments and hybrid stochastic-deterministic models.

Author information

1
Institute of Computational Biology, Helmholtz Zentrum München, Ingolstädter Landstraße 1, 85764 , Neuherberg, Germany, jan.hasenauer@helmholtz-muenchen.de.

Abstract

The time-evolution of continuous-time discrete-state biochemical processes is governed by the Chemical Master Equation (CME), which describes the probability of the molecular counts of each chemical species. As the corresponding number of discrete states is, for most processes, large, a direct numerical simulation of the CME is in general infeasible. In this paper we introduce the method of conditional moments (MCM), a novel approximation method for the solution of the CME. The MCM employs a discrete stochastic description for low-copy number species and a moment-based description for medium/high-copy number species. The moments of the medium/high-copy number species are conditioned on the state of the low abundance species, which allows us to capture complex correlation structures arising, e.g., for multi-attractor and oscillatory systems. We prove that the MCM provides a generalization of previous approximations of the CME based on hybrid modeling and moment-based methods. Furthermore, it improves upon these existing methods, as we illustrate using a model for the dynamics of stochastic single-gene expression. This application example shows that due to the more general structure, the MCM allows for the approximation of multi-modal distributions.

PMID:
23918091
DOI:
10.1007/s00285-013-0711-5
[Indexed for MEDLINE]

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