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PLoS One. 2013 Jun 10;8(6):e65190. doi: 10.1371/journal.pone.0065190. Print 2013.

Information exploration system for sickle cell disease and repurposing of hydroxyfasudil.

Author information

1
Computer, Electrical and Mathematical Sciences and Engineering Division-CEMSE, Computational Bioscience Research Center-CBRC, King Abdullah University of Science and Technology-KAUST, Thuwal, Saudi Arabia.

Abstract

BACKGROUND:

Sickle cell disease (SCD) is a fatal monogenic disorder with no effective cure and thus high rates of morbidity and sequelae. Efforts toward discovery of disease modifying drugs and curative strategies can be augmented by leveraging the plethora of information contained in available biomedical literature. To facilitate research in this direction we have developed a resource, Dragon Exploration System for Sickle Cell Disease (DESSCD) (http://cbrc.kaust.edu.sa/desscd/) that aims to promote the easy exploration of SCD-related data.

DESCRIPTION:

The Dragon Exploration System (DES), developed based on text mining and complemented by data mining, processed 419,612 MEDLINE abstracts retrieved from a PubMed query using SCD-related keywords. The processed SCD-related data has been made available via the DESSCD web query interface that enables: a/information retrieval using specified concepts, keywords and phrases, and b/the generation of inferred association networks and hypotheses. The usefulness of the system is demonstrated by: a/reproducing a known scientific fact, the "Sickle_Cell_Anemia-Hydroxyurea" association, and b/generating novel and plausible "Sickle_Cell_Anemia-Hydroxyfasudil" hypothesis. A PCT patent (PCT/US12/55042) has been filed for the latter drug repurposing for SCD treatment.

CONCLUSION:

We developed the DESSCD resource dedicated to exploration of text-mined and data-mined information about SCD. No similar SCD-related resource exists. Thus, we anticipate that DESSCD will serve as a valuable tool for physicians and researchers interested in SCD.

PMID:
23762313
PMCID:
PMC3677893
DOI:
10.1371/journal.pone.0065190
[Indexed for MEDLINE]
Free PMC Article

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