Format

Send to

Choose Destination
See comment in PubMed Commons below
Bioinformatics. 2013 Jul 15;29(14):1830-1. doi: 10.1093/bioinformatics/btt285. Epub 2013 Jun 4.

Pathview: an R/Bioconductor package for pathway-based data integration and visualization.

Author information

1
Department of Bioinformatics and Genomics, UNC Charlotte, Charlotte, NC 28223, USA. luo_weijun@yahoo.com

Abstract

SUMMARY:

Pathview is a novel tool set for pathway-based data integration and visualization. It maps and renders user data on relevant pathway graphs. Users only need to supply their data and specify the target pathway. Pathview automatically downloads the pathway graph data, parses the data file, maps and integrates user data onto the pathway and renders pathway graphs with the mapped data. Although built as a stand-alone program, Pathview may seamlessly integrate with pathway and functional analysis tools for large-scale and fully automated analysis pipelines.

AVAILABILITY:

The package is freely available under the GPLv3 license through Bioconductor and R-Forge. It is available at http://bioconductor.org/packages/release/bioc/html/pathview.html and at http://Pathview.r-forge.r-project.org/.

CONTACT:

luo_weijun@yahoo.com

SUPPLEMENTARY INFORMATION:

Supplementary data are available at Bioinformatics online.

PMID:
23740750
PMCID:
PMC3702256
DOI:
10.1093/bioinformatics/btt285
[Indexed for MEDLINE]
Free PMC Article
PubMed Commons home

PubMed Commons

0 comments
How to join PubMed Commons

    Supplemental Content

    Full text links

    Icon for Silverchair Information Systems Icon for PubMed Central
    Loading ...
    Support Center