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Anal Chim Acta. 2013 Jun 5;781:33-40. doi: 10.1016/j.aca.2013.04.007. Epub 2013 Apr 17.

Nuclear magnetic resonance metabonomic profiling using tO2PLS.

Author information

1
Department of Chemistry, School of Applied Sciences, RMIT University, City Campus, Vic 3001, Australia. gemma.kirwan@gmail.com

Abstract

Blood plasma collected from adult fish (black bream, Sparidae) exposed to a dose of 5 mg kg(-1) 17β-estradiol underwent metabonomic profiling using nuclear magnetic resonance (NMR). An extension of the orthogonal 2 projection to latent structure (O2PLS) analysis, tO2PLS, was proposed and utilized to classify changes between the control and experimental metabolic profiles. As a bidirectional modeling tool, O2PLS examines the (variable) commonality between two different data blocks, and extracts the joint correlations as well as the unique variations present within each data block. tO2PLS is a proposed matrix transposition of O2PLS to allow for commonality between experiments (spectral profiles) to be observed, rather than between sample variables. tO2PLS analysis highlighted two potential biomarkers, trimethylamine-N-oxide (TMAO) and choline, that distinguish between control and 17β-estradiol exposed fish. This study presents an alternative way of examining spectroscopic (metabolite) data, providing a method for the visual assessment of similarities and differences between control and experimental spectral features in large data sets.

PMID:
23684462
DOI:
10.1016/j.aca.2013.04.007
[Indexed for MEDLINE]

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