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Curr Opin Biotechnol. 2013 Dec;24(6):973-8. doi: 10.1016/j.copbio.2013.03.018. Epub 2013 Apr 20.

Dynamic metabolic flux analysis--tools for probing transient states of metabolic networks.

Author information

1
Department of Chemical and Biomolecular Engineering, Metabolic Engineering and Systems Biology Laboratory, University of Delaware, Newark DE 19716, USA. Electronic address: mranton@udel.edu.

Abstract

Computational approaches for analyzing dynamic states of metabolic networks provide a practical framework for design, control, and optimization of biotechnological processes. In recent years, two promising modeling approaches have emerged for characterizing transients in cellular metabolism, dynamic metabolic flux analysis (DMFA), and dynamic flux balance analysis (DFBA). Both approaches combine metabolic network analysis based on pseudo steady-state (PSS) assumption for intracellular metabolism with dynamic models for extracellular environment. One strategy to capture dynamics is by combining network analysis with a kinetic model. Predictive models are thus established that can be used to optimize bioprocessing conditions and identify useful genetic manipulations. Alternatively, by combining network analysis with methods for analyzing extracellular time-series data, transients in intracellular metabolic fluxes can be determined and applied for process monitoring and control.

PMID:
23611566
DOI:
10.1016/j.copbio.2013.03.018
[Indexed for MEDLINE]

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