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Proteins. 2013 Aug;81(8):1479-84. doi: 10.1002/prot.24297. Epub 2013 Jun 1.

Structure of the RNA-directed RNA polymerase from the cystovirus φ12.

Author information

1
Department of Chemistry, The City College of New York, New York, New York 10031, USA.

Abstract

We have determined the structure of P2, the self-priming RdRp from cystovirus φ12 in two crystal forms (A, B) at resolutions of 1.7 Å and 2.1 Å. Form A contains Mg(2+) bound at a site that deviates from the canonical noncatalytic position seen in form B. These structures provide insight into the temperature sensitivity of a ts-mutant. However, the tunnel through which template ssRNA accesses the active site is partially occluded by a flexible loop; this feature, along with suboptimal positioning of other structural elements that prevent the formation of a stable initiation complex, indicate an inactive conformation in crystallo.

KEYWORDS:

RNA-directed RNA polymerase; bacteriophage; cystovirus; de novo initiation; replication; transcription

PMID:
23568335
PMCID:
PMC4090683
DOI:
10.1002/prot.24297
[Indexed for MEDLINE]
Free PMC Article

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