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J Hum Genet. 2013 Jun;58(6):378-83. doi: 10.1038/jhg.2013.21. Epub 2013 Apr 4.

Five linkage regions each harbor multiple type 2 diabetes genes in the African American subset of the GENNID Study.

Author information

1
Department of Human Genetics, University of Utah, Salt Lake City, UT 84112 5330, USA. sandy@genetics.utah.edu

Abstract

We previously localized type 2 diabetes (T2D)-susceptibility genes to five chromosomal regions through a genome-wide linkage scan of T2D and age of diagnosis (AOD) in the African American subset of the GENNID sample. To follow up these findings, we repeated the linkage and association analysis using genotypes on an additional 9203 fine-mapping single nucleotide polymorphisms (SNPs) selected to tag genes under the linkage peaks. In each of the five regions, we confirmed linkage and inferred the presence of ≥2 susceptibility genes. The evidence of multiple susceptibility genes consisted of: (1) multiple linkage peaks in four of the five regions; and (2) association of T2D and AOD with SNPs within ≥2 genes in every region. The associated genes included 3 previously reported to associate with T2D or related traits (GRB10, NEDD4L, LIPG) and 24 novel candidate genes, including genes in lipid metabolism (ACOXL) and cell-cell and cell-matrix adhesion (MAGI2, CLDN4, CTNNA2).

PMID:
23552671
PMCID:
PMC3692593
DOI:
10.1038/jhg.2013.21
[Indexed for MEDLINE]
Free PMC Article

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