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Philos Trans R Soc Lond B Biol Sci. 2013 Mar 11;368(1616):20120322. doi: 10.1098/rstb.2012.0322. Print 2013 Apr 19.

Overview of organohalide-respiring bacteria and a proposal for a classification system for reductive dehalogenases.

Author information

1
Department of Cell and Systems Biology, University of Toronto, Toronto, ON, Canada.

Abstract

Organohalide respiration is an anaerobic bacterial respiratory process that uses halogenated hydrocarbons as terminal electron acceptors during electron transport-based energy conservation. This dechlorination process has triggered considerable interest for detoxification of anthropogenic groundwater contaminants. Organohalide-respiring bacteria have been identified from multiple bacterial phyla, and can be categorized as obligate and non-obligate organohalide respirers. The majority of the currently known organohalide-respiring bacteria carry multiple reductive dehalogenase genes. Analysis of a curated set of reductive dehalogenases reveals that sequence similarity and substrate specificity are generally not correlated, making functional prediction from sequence information difficult. In this article, an orthologue-based classification system for the reductive dehalogenases is proposed to aid integration of new sequencing data and to unify terminology.

PMID:
23479752
PMCID:
PMC3638463
DOI:
10.1098/rstb.2012.0322
[Indexed for MEDLINE]
Free PMC Article

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