Low impact development best management practices (LID-BMPs) are considered to be cost-effective measures for mitigating the water quantity and quality impact of urban runoff. Currently, there are many types of LID-BMPs, and each type has its own intrinsic technical and/or economical characteristics and limitations for implementation. The selection of the most appropriate BMP type(s) for a specific installation site is therefore a very important planning step. In the present study, a multi-criteria selection index system (MCIS) for LID-BMP planning was developed. The selection indexes include 12 first-level indices and 26 second-level indices which reflect the specific installation site characteristics pertaining to site suitability, runoff control performance, and economics of implementation. A mechanism for ranking the BMPs was devised. First, each individual second-level index was assigned a numeric value that was based on site characteristics and information on LID-BMPs. The quantified indices were normalized and then integrated to obtain the score for each of the first-level index. The final evaluation scores of each LID-BMP were then calculated based on the scores for the first-level indices. Finally, the appropriate BMP types for a specific installation site were determined according to the rank of the final evaluation scores. In order to facilitate the application of the MCIS BMP ranking system, the computational process has been coded into a software program, BMPSELEC. A case study demonstrating the MCIS methodology, using an LID-BMP implementation planning at a college campus in Foshan, Guangdong Province, is presented.