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Cancer Immun. 2012;12:15. Epub 2012 Dec 28.

SurfaceomeDB: a cancer-orientated database for genes encoding cell surface proteins.

Author information

1
Ludwig Institute for Cancer Research, São Paulo Branch at Hospital Alemão Oswaldo Cruz, São Paulo, Brazil.

Abstract

Cell surface proteins (CSPs) are excellent targets for the development of diagnostic and therapeutic reagents, and it is estimated that 10-20% of all genes in the human genome encode CSPs. In an effort to integrate all data publicly available for genes encoding cell surface proteins, a database (SurfaceomeDB) was developed. SurfaceomeDB is a gene-centered portal containing different types of information, including annotation for gene expression, protein domains, somatic mutations in cancer, and protein-protein interactions for all human genes encoding CSPs. SurfaceomeDB was implemented as an integrative and relational database in a user-friendly web interface, where users can search for gene name, gene annotation, or keywords. There is also a streamlined graphical representation of all data provided and links to the most important data repositories and databases, such as NCBI, UCSC Genome Browser, and EBI.

KEYWORDS:

SurfaceomeDB; cell surface proteins; gene library

PMID:
23390370
PMCID:
PMC3554024
[Indexed for MEDLINE]
Free PMC Article

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