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Bioinformatics. 2013 Apr 1;29(7):950-2. doi: 10.1093/bioinformatics/btt051. Epub 2013 Jan 30.

MSMExplorer: visualizing Markov state models for biomolecule folding simulations.

Author information

1
Department of Computer Science, Stanford University, Stanford, CA 94305, USA.

Abstract

SUMMARY:

Markov state models (MSMs) for the study of biomolecule folding simulations have emerged as a powerful tool for computational study of folding dynamics. MSMExplorer is a visualization application purpose-built to visualize these MSMs with an aim to increase the efficacy and reach of MSM science.

AVAILABILITY:

MSMExplorer is available for download from https://simtk.org/home/msmexplorer. The source code is made available under the GNU Lesser General Public License at https://github.com/SimTk/msmexplorer.

PMID:
23365411
DOI:
10.1093/bioinformatics/btt051
[Indexed for MEDLINE]

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