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Bioinformatics. 2013 Feb 15;29(4):494-6. doi: 10.1093/bioinformatics/bts731. Epub 2013 Jan 12.

NGSUtils: a software suite for analyzing and manipulating next-generation sequencing datasets.

Author information

1
Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN 46202, USA.

Abstract

SUMMARY:

NGSUtils is a suite of software tools for manipulating data common to next-generation sequencing experiments, such as FASTQ, BED and BAM format files. These tools provide a stable and modular platform for data management and analysis.

AVAILABILITY AND IMPLEMENTATION:

NGSUtils is available under a BSD license and works on Mac OS X and Linux systems. Python 2.6+ and virtualenv are required. More information and source code may be obtained from the website: http://ngsutils.org.

PMID:
23314324
PMCID:
PMC3570212
DOI:
10.1093/bioinformatics/bts731
[Indexed for MEDLINE]
Free PMC Article

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