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PLoS One. 2012;7(12):e51178. doi: 10.1371/journal.pone.0051178. Epub 2012 Dec 27.

Hierarchic stochastic modelling applied to intracellular Ca(2+) signals.

Author information

1
Mathematical Cell Physiology, Max Delbrück Center for Molecular Medicine, Berlin, Germany.

Abstract

Important biological processes like cell signalling and gene expression have noisy components and are very complex at the same time. Mathematical analysis of such systems has often been limited to the study of isolated subsystems, or approximations are used that are difficult to justify. Here we extend a recently published method (Thurley and Falcke, PNAS 2011) which is formulated in observable system configurations instead of molecular transitions. This reduces the number of system states by several orders of magnitude and avoids fitting of kinetic parameters. The method is applied to Ca(2+) signalling. Ca(2+) is a ubiquitous second messenger transmitting information by stochastic sequences of concentration spikes, which arise by coupling of subcellular Ca(2+) release events (puffs). We derive analytical expressions for a mechanistic Ca(2+) model, based on recent data from live cell imaging, and calculate Ca(2+) spike statistics in dependence on cellular parameters like stimulus strength or number of Ca(2+) channels. The new approach substantiates a generic Ca(2+) model, which is a very convenient way to simulate Ca(2+) spike sequences with correct spiking statistics.

PMID:
23300536
PMCID:
PMC3531454
DOI:
10.1371/journal.pone.0051178
[Indexed for MEDLINE]
Free PMC Article
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