Sequence, stability, and structure of G-quadruplexes and their interactions with drugs

Curr Protoc Nucleic Acid Chem. 2012 Sep:Chapter 17:Unit17.5. doi: 10.1002/0471142700.nc1705s50.

Abstract

Although DNA is most widely known for its ability to store and pass along genetic information, the discovery of G-quadruplex structures has illuminated a new role for DNA in biology. DNA G-quadruplexes are four-stranded globular nucleic acid secondary structures formed in specific G-rich sequences with biological significance, such as human telomeres and oncogene promoters. This review focuses on the unimolecular DNA G-quadruplexes, which can readily form in solution under physiological conditions and are considered to be the most biologically relevant. Available structural data show a great conformational diversity of unimolecular G-quadruplexes, which are amenable to small-molecule drug targeting. The relationships between sequence, structure, and stability of unimolecular DNA G-quadruplexes, as well as the recent progress on interactions with small-molecule compounds and insights into rational design of G-quadruplex-interactive molecules, will be discussed.

Publication types

  • Research Support, N.I.H., Extramural
  • Review

MeSH terms

  • Alkaloids / chemistry*
  • Base Pairing
  • Base Sequence
  • DNA / chemistry*
  • G-Quadruplexes / drug effects*
  • Humans
  • Hydrogen Bonding
  • Indoles / chemistry*
  • Models, Molecular
  • Promoter Regions, Genetic
  • Quinolines / chemistry*
  • Telomere / chemistry

Substances

  • Alkaloids
  • Indoles
  • Quinolines
  • quindoline
  • DNA