Complete mitochondrial genome of the free-living earwig, Challia fletcheri (Dermaptera: Pygidicranidae) and phylogeny of Polyneoptera

PLoS One. 2012;7(8):e42056. doi: 10.1371/journal.pone.0042056. Epub 2012 Aug 6.

Abstract

The insect order Dermaptera, belonging to Polyneoptera, includes ∼2,000 extant species, but no dermapteran mitochondrial genome has been sequenced. We sequenced the complete mitochondrial genome of the free-living earwig, Challia fletcheri, compared its genomic features to other available mitochondrial sequences from polyneopterous insects. In addition, the Dermaptera, together with the other known polyneopteran mitochondrial genome sequences (protein coding, ribosomal RNA, and transfer RNA genes), were employed to understand the phylogeny of Polyneoptera, one of the least resolved insect phylogenies, with emphasis on the placement of Dermaptera. The complete mitochondrial genome of C. fletcheri presents the following several unusual features: the longest size in insects is 20,456 bp; it harbors the largest tandem repeat units (TRU) among insects; it displays T- and G-skewness on the major strand and A- and C-skewness on the minor strand, which is a reversal of the general pattern found in most insect mitochondrial genomes, and it possesses a unique gene arrangement characterized by a series of gene translocations and/or inversions. The reversal pattern of skewness is explained in terms of inversion of replication origin. All phylogenetic analyses consistently placed Dermaptera as the sister to Plecoptera, leaving them as the most basal lineage of Polyneoptera or sister to Ephemeroptera, and placed Odonata consistently as the most basal lineage of the Pterygota.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • AT Rich Sequence / genetics
  • Animals
  • Base Sequence
  • DNA, Intergenic / genetics
  • Gene Order / genetics
  • Genes, Mitochondrial / genetics
  • Genome, Insect / genetics*
  • Genome, Mitochondrial / genetics*
  • Insecta / genetics*
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Phylogeny*
  • RNA, Transfer / genetics
  • Tandem Repeat Sequences / genetics

Substances

  • DNA, Intergenic
  • RNA, Transfer

Associated data

  • GENBANK/JN651407

Grants and funding

This work was supported by research grants from the National Institute of Biological Resources – “The Genetic Evaluation of Important Biological Resources” awarded to Iksoo Kim. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.