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Items: 20

1.

An integrated functional genomics approach identifies the regulatory network directed by brachyury (T) in chordoma.

Nelson AC, Pillay N, Henderson S, Presneau N, Tirabosco R, Halai D, Berisha F, Flicek P, Stemple DL, Stern CD, Wardle FC, Flanagan AM.

J Pathol. 2012 Nov;228(3):274-85. doi: 10.1002/path.4082.

PMID:
22847733
2.

Integrated genomics, physiology and breeding approaches for improving drought tolerance in crops.

Mir RR, Zaman-Allah M, Sreenivasulu N, Trethowan R, Varshney RK.

Theor Appl Genet. 2012 Aug;125(4):625-45. doi: 10.1007/s00122-012-1904-9. Review.

3.

Targeted proteomics of the eicosanoid biosynthetic pathway completes an integrated genomics-proteomics-metabolomics picture of cellular metabolism.

Sabidó E, Quehenberger O, Shen Q, Chang CY, Shah I, Armando AM, Andreyev A, Vitek O, Dennis EA, Aebersold R.

Mol Cell Proteomics. 2012 Jul;11(7):M111.014746. doi: 10.1074/mcp.M111.014746.

4.

Combining integrated genomics and functional genomics to dissect the biology of a cancer-associated, aberrant transcription factor, the ASPSCR1-TFE3 fusion oncoprotein.

Kobos R, Nagai M, Tsuda M, Merl MY, Saito T, Laé M, Mo Q, Olshen A, Lianoglou S, Leslie C, Ostrovnaya I, Antczak C, Djaballah H, Ladanyi M.

J Pathol. 2013 Apr;229(5):743-54. doi: 10.1002/path.4158.

5.

Integrated genomics identifies five medulloblastoma subtypes with distinct genetic profiles, pathway signatures and clinicopathological features.

Kool M, Koster J, Bunt J, Hasselt NE, Lakeman A, van Sluis P, Troost D, Meeteren NS, Caron HN, Cloos J, Mrsić A, Ylstra B, Grajkowska W, Hartmann W, Pietsch T, Ellison D, Clifford SC, Versteeg R.

PLoS One. 2008 Aug 28;3(8):e3088. doi: 10.1371/journal.pone.0003088.

6.

Functional genomics by integrated analysis of metabolome and transcriptome of Arabidopsis plants over-expressing an MYB transcription factor.

Tohge T, Nishiyama Y, Hirai MY, Yano M, Nakajima J, Awazuhara M, Inoue E, Takahashi H, Goodenowe DB, Kitayama M, Noji M, Yamazaki M, Saito K.

Plant J. 2005 Apr;42(2):218-35.

7.

Genomics and integrated systems biology in Plasmodium falciparum: a path to malaria control and eradication.

Le Roch KG, Chung DW, Ponts N.

Parasite Immunol. 2012 Feb-Mar;34(2-3):50-60. doi: 10.1111/j.1365-3024.2011.01340.x. Review.

8.

atBioNet--an integrated network analysis tool for genomics and biomarker discovery.

Ding Y, Chen M, Liu Z, Ding D, Ye Y, Zhang M, Kelly R, Guo L, Su Z, Harris SC, Qian F, Ge W, Fang H, Xu X, Tong W.

BMC Genomics. 2012 Jul 20;13:325. doi: 10.1186/1471-2164-13-325.

9.

A SNP microarray and FISH-based procedure to detect allelic imbalances in multiple myeloma: an integrated genomics approach reveals a wide gene dosage effect.

Agnelli L, Mosca L, Fabris S, Lionetti M, Andronache A, Kwee I, Todoerti K, Verdelli D, Battaglia C, Bertoni F, Deliliers GL, Neri A.

Genes Chromosomes Cancer. 2009 Jul;48(7):603-14. doi: 10.1002/gcc.20668.

PMID:
19396863
10.

Integrated genomics of ovarian xenograft tumor progression and chemotherapy response.

Stuckey A, Fischer A, Miller DH, Hillenmeyer S, Kim KK, Ritz A, Singh RK, Raphael BJ, Brard L, Brodsky AS.

BMC Cancer. 2011 Jul 22;11:308. doi: 10.1186/1471-2407-11-308.

11.

MicrobesOnline: an integrated portal for comparative and functional genomics.

Dehal PS, Joachimiak MP, Price MN, Bates JT, Baumohl JK, Chivian D, Friedland GD, Huang KH, Keller K, Novichkov PS, Dubchak IL, Alm EJ, Arkin AP.

Nucleic Acids Res. 2010 Jan;38(Database issue):D396-400. doi: 10.1093/nar/gkp919.

12.
13.

Integrated proteomics and genomics strategies bring new insight into Candida albicans response upon macrophage interaction.

Fernández-Arenas E, Cabezón V, Bermejo C, Arroyo J, Nombela C, Diez-Orejas R, Gil C.

Mol Cell Proteomics. 2007 Mar;6(3):460-78.

14.

Orchidstra: an integrated orchid functional genomics database.

Su CL, Chao YT, Yen SH, Chen CY, Chen WC, Chang YC, Shih MC.

Plant Cell Physiol. 2013 Feb;54(2):e11. doi: 10.1093/pcp/pct004.

15.

FungiDB: an integrated functional genomics database for fungi.

Stajich JE, Harris T, Brunk BP, Brestelli J, Fischer S, Harb OS, Kissinger JC, Li W, Nayak V, Pinney DF, Stoeckert CJ Jr, Roos DS.

Nucleic Acids Res. 2012 Jan;40(Database issue):D675-81. doi: 10.1093/nar/gkr918.

16.
17.

"Lineage addiction" in human cancer: lessons from integrated genomics.

Garraway LA, Weir BA, Zhao X, Widlund H, Beroukhim R, Berger A, Rimm D, Rubin MA, Fisher DE, Meyerson ML, Sellers WR.

Cold Spring Harb Symp Quant Biol. 2005;70:25-34.

PMID:
16869735
18.

RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach.

Novichkov PS, Rodionov DA, Stavrovskaya ED, Novichkova ES, Kazakov AE, Gelfand MS, Arkin AP, Mironov AA, Dubchak I.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W299-307. doi: 10.1093/nar/gkq531.

19.

An integrated proteomics and genomics analysis to unravel a heterogeneous platelet secretion defect.

Di Michele M, Thys C, Waelkens E, Overbergh L, D'Hertog W, Mathieu C, De Vos R, Peerlinck K, Van Geet C, Freson K.

J Proteomics. 2011 May 16;74(6):902-13. doi: 10.1016/j.jprot.2011.03.007.

PMID:
21406263
20.

[From population genetics to population genomics of forest trees: integrated population genomics approach].

Krutovskiĭ KV.

Genetika. 2006 Oct;42(10):1304-18. Review. Russian.

PMID:
17152702
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