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Bioinformatics. 2012 Sep 15;28(18):2404-6. doi: 10.1093/bioinformatics/bts449. Epub 2012 Jul 19.

DanteR: an extensible R-based tool for quantitative analysis of -omics data.

Author information

1
Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99352, USA.

Abstract

MOTIVATION:

The size and complex nature of mass spectrometry-based proteomics datasets motivate development of specialized software for statistical data analysis and exploration. We present DanteR, a graphical R package that features extensive statistical and diagnostic functions for quantitative proteomics data analysis, including normalization, imputation, hypothesis testing, interactive visualization and peptide-to-protein rollup. More importantly, users can easily extend the existing functionality by including their own algorithms under the Add-On tab.

AVAILABILITY:

DanteR and its associated user guide are available for download free of charge at http://omics.pnl.gov/software/. We have an updated binary source for the DanteR package up on our website together with a vignettes document. For Windows, a single click automatically installs DanteR along with the R programming environment. For Linux and Mac OS X, users must install R and then follow instructions on the DanteR website for package installation.

CONTACT:

rds@pnnl.gov.

PMID:
22815360
PMCID:
PMC3436848
DOI:
10.1093/bioinformatics/bts449
[Indexed for MEDLINE]
Free PMC Article

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