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GENIES: gene network inference engine based on supervised analysis.

Kotera M, Yamanishi Y, Moriya Y, Kanehisa M, Goto S.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W162-7. doi: 10.1093/nar/gks459. Epub 2012 May 18.


Prediction of missing enzyme genes in a bacterial metabolic network. Reconstruction of the lysine-degradation pathway of Pseudomonas aeruginosa.

Yamanishi Y, Mihara H, Osaki M, Muramatsu H, Esaki N, Sato T, Hizukuri Y, Goto S, Kanehisa M.

FEBS J. 2007 May;274(9):2262-73. Epub 2007 Mar 27.


Supervised enzyme network inference from the integration of genomic data and chemical information.

Yamanishi Y, Vert JP, Kanehisa M.

Bioinformatics. 2005 Jun;21 Suppl 1:i468-77.


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