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Mol Cell Probes. 2012 Oct;26(5):208-11. doi: 10.1016/j.mcp.2012.05.002. Epub 2012 May 17.

miRSeqNovel: an R based workflow for analyzing miRNA sequencing data.

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1
DNA Sequencing and Genomics Laboratory, Institute of Biotechnology, University of Helsinki, Helsinki, Finland. kui.qian@helsinki.fi

Abstract

We present miRSeqNovel, an R based workflow for miRNA sequencing data analysis. miRSeqNovel can process both colorspace (SOLiD) and basespace (Illumina/Solexa) data by different mapping algorithms. It finds differentially expressed miRNAs and gives conservative prediction of novel miRNA candidates with customized parameters. miRSeqNovel is freely available at http://sourceforge.net/projects/mirseq/files.

PMID:
22609373
DOI:
10.1016/j.mcp.2012.05.002
[Indexed for MEDLINE]
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