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Bioinform Biol Insights. 2012;6:97-128. doi: 10.4137/BBI.S9356. Epub 2012 May 3.

Different evolutionary modifications as a guide to rewire two-component systems.

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1
Dept of Bioinformatics, Biocenter, Am Hubland, University of Würzburg, D-97074 Würzburg, Germany.

Abstract

Two-component systems (TCS) are short signalling pathways generally occurring in prokaryotes. They frequently regulate prokaryotic stimulus responses and thus are also of interest for engineering in biotechnology and synthetic biology. The aim of this study is to better understand and describe rewiring of TCS while investigating different evolutionary scenarios. Based on large-scale screens of TCS in different organisms, this study gives detailed data, concrete alignments, and structure analysis on three general modification scenarios, where TCS were rewired for new responses and functions: (i) exchanges in the sequence within single TCS domains, (ii) exchange of whole TCS domains; (iii) addition of new components modulating TCS function. As a result, the replacement of stimulus and promotor cassettes to rewire TCS is well defined exploiting the alignments given here. The diverged TCS examples are non-trivial and the design is challenging. Designed connector proteins may also be useful to modify TCS in selected cases.

KEYWORDS:

Mycoplasma; connector; engineering; histidine kinase; promoter; response regulator; sensor; sequence alignment; synthetic biology

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