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Mol Cell Proteomics. 2012 Jul;11(7):M111.010595. doi: 10.1074/mcp.M111.010595. Epub 2012 Mar 12.

Scientific workflow management in proteomics.

Author information

1
Section for Medical Expert and Knowledge-Based Systems, Center for Medical Statistics, Informatics, and Intelligent Systems, Medical University of Vienna, Spitalgasse 23, A-1090 Vienna, Austria.

Abstract

Data processing in proteomics can be a challenging endeavor, requiring extensive knowledge of many different software packages, all with different algorithms, data format requirements, and user interfaces. In this article we describe the integration of a number of existing programs and tools in Taverna Workbench, a scientific workflow manager currently being developed in the bioinformatics community. We demonstrate how a workflow manager provides a single, visually clear and intuitive interface to complex data analysis tasks in proteomics, from raw mass spectrometry data to protein identifications and beyond.

PMID:
22411703
PMCID:
PMC3394934
DOI:
10.1074/mcp.M111.010595
[Indexed for MEDLINE]
Free PMC Article

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