Expression of retrograde response target genes. Expression of IDH1, IDH2, and ACO1 relative to ACT1 was determined by qRT-PCR as described in Section The strains used were as follows: YPK9 (rho+), YJR2 (rho0), YJR2 ATP1-111, and YPK9 cox4Δ. Error bars are SEM for N = 6 determinations. Expression of IDH1, IDH2, and ACO1 increased in YJR2 compared to YPK9 (P = 3.96 × 10−4, 3.06 × 10−4, and 0.0024, respectively) and in YPK9 cox4Δ compared to YPK9 (P = 0.0102, 0.0081, and 0.0051, respectively). Expression of IDH1, IDH2, and ACO1 decreased in YJR2 ATP1-111 compared to YJR2 (P = 1.08 × 10−4, 2.73 × 10−4, and 0.0021, respectively). P-values are adjusted for multiple comparisons.