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Bioinformatics. 2012 Mar 15;28(6):891-2. doi: 10.1093/bioinformatics/btr719. Epub 2011 Dec 30.

CytoSEED: a Cytoscape plugin for viewing, manipulating and analyzing metabolic models created by the Model SEED.

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1
Computer Science Department, Hope College, Holland, MI 49423, USA. dejongh@hope.edu

Abstract

CytoSEED is a Cytoscape plugin for viewing, manipulating and analyzing metabolic models created using the Model SEED. The CytoSEED plugin enables users of the Model SEED to create informative visualizations of the reaction networks generated for their organisms of interest. These visualizations are useful for understanding organism-specific biochemistry and for highlighting the results of flux variability analysis experiments.

PMID:
22210867
PMCID:
PMC3307106
DOI:
10.1093/bioinformatics/btr719
[Indexed for MEDLINE]
Free PMC Article
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