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Bioinformatics. 2012 Feb 15;28(4):464-9. doi: 10.1093/bioinformatics/btr703. Epub 2011 Dec 22.

Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data.

Author information

1
Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK. artemis@sanger.ac.uk

Abstract

MOTIVATION:

High-throughput sequencing (HTS) technologies have made low-cost sequencing of large numbers of samples commonplace. An explosion in the type, not just number, of sequencing experiments has also taken place including genome re-sequencing, population-scale variation detection, whole transcriptome sequencing and genome-wide analysis of protein-bound nucleic acids.

RESULTS:

We present Artemis as a tool for integrated visualization and computational analysis of different types of HTS datasets in the context of a reference genome and its corresponding annotation.

AVAILABILITY:

Artemis is freely available (under a GPL licence) for download (for MacOSX, UNIX and Windows) at the Wellcome Trust Sanger Institute websites: http://www.sanger.ac.uk/resources/software/artemis/.

PMID:
22199388
PMCID:
PMC3278759
DOI:
10.1093/bioinformatics/btr703
[Indexed for MEDLINE]
Free PMC Article

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