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Wiley Interdiscip Rev Syst Biol Med. 2012 Mar-Apr;4(2):129-40. doi: 10.1002/wsbm.165. Epub 2011 Dec 2.

Virtual Cell: computational tools for modeling in cell biology.

Author information

1
Richard D. Berlin Center for Cell Analysis and Modeling, Department of Cell Biology, University of Connecticut Health Center, Farmington, CT, USA.

Abstract

The Virtual Cell (VCell) is a general computational framework for modeling physicochemical and electrophysiological processes in living cells. Developed by the National Resource for Cell Analysis and Modeling at the University of Connecticut Health Center, it provides automated tools for simulating a wide range of cellular phenomena in space and time, both deterministically and stochastically. These computational tools allow one to couple electrophysiology and reaction kinetics with transport mechanisms, such as diffusion and directed transport, and map them onto spatial domains of various shapes, including irregular three-dimensional geometries derived from experimental images. In this article, we review new robust computational tools recently deployed in VCell for treating spatially resolved models.

PMID:
22139996
PMCID:
PMC3288182
DOI:
10.1002/wsbm.165
[Indexed for MEDLINE]
Free PMC Article

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