(A and B) Gene expression array data comparing single and double Sohlh1/Sohlh2 mutant mice. (A) Hierarchical clustering analysis. Each row corresponds to a specific genotype shown at the bottom of the column, and each column corresponds to the relative expression profile of each genes. The color scheme reflects the expression level against the median of 4 genotypes, and the range bar is shown (0 is median). Sohlh1−/− (S1−/−) and Sohlh2−/− (S2−/−) single mutants showed overall a similar pattern of gene expression overall, while the Sohlh1−/−/Sohlh2−/− double mutant (dKO) showed a remarkably different pattern from either the wild type (WT) or single knockouts. (B) Venn diagram of gene expression changes in Sohlh1−/− (green), Sohlh2−/− (blue) and Sohlh1−/−/Sohlh2−/− (dKO, red). The intersection of genotypes indicates the number of genes where expression changed in two or all Sohlh mutants. Upward arrows indicate numbers of genes with enhanced expression, and downward arrows indicate reduced expression. Nearly 4 times as many genes were affected in the double mutant as compared to the single mutants. (C–F) Quantitative real-time PCR analysis on 1-week-old testis for genes differentially expressed between wild type (white), Sohlh1−/− (light gray), Sohlh2−/− (dark gray) and Sohlh1−/−/Sohlh 2−/− (dKO, black). Each gene is indicated at the bottom of the respective column. Genes involved in: (C) spermatogonial differentiation, (D) spermatogonial stem cell maintenance, (E) mRNA translational regulation, and (F) meiosis and epigenetics were evaluated. Data were normalized against Gapdh expression and are given as the mean relative quantity, with error bars representing the SEM. Student t-test was used to calculate P values. Significance was shown as a single asterisk when P < 0.05 against wild type. A double asterisk was used to show when double knockout expression significantly differed (P<0.05) not only against the wild type but also against Sohlh1 and Sohlh2 single knockouts (Spo11, Rec8 and Tia1).