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PLoS One. 2011;6(6):e20907. doi: 10.1371/journal.pone.0020907. Epub 2011 Jun 10.

A network of genes, genetic disorders, and brain areas.

Author information

1
Department of Biostatistical Sciences, Wake Forest University School of Medicine, Winston-Salem, North Carolina, United States of America. shayasak @ wfubmc.edu

Abstract

The network-based approach has been used to describe the relationship among genes and various phenotypes, producing a network describing complex biological relationships. Such networks can be constructed by aggregating previously reported associations in the literature from various databases. In this work, we applied the network-based approach to investigate how different brain areas are associated to genetic disorders and genes. In particular, a tripartite network with genes, genetic diseases, and brain areas was constructed based on the associations among them reported in the literature through text mining. In the resulting network, a disproportionately large number of gene-disease and disease-brain associations were attributed to a small subset of genes, diseases, and brain areas. Furthermore, a small number of brain areas were found to be associated with a large number of the same genes and diseases. These core brain regions encompassed the areas identified by the previous genome-wide association studies, and suggest potential areas of focus in the future imaging genetics research. The approach outlined in this work demonstrates the utility of the network-based approach in studying genetic effects on the brain.

PMID:
21695164
PMCID:
PMC3112220
DOI:
10.1371/journal.pone.0020907
[Indexed for MEDLINE]
Free PMC Article

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