Structure of the [M + H - H2O]+ ion from tetraglycine: a revisit by means of density functional theory and isotope labeling

J Phys Chem A. 2011 Jun 23;115(24):6683-7. doi: 10.1021/jp202820h. Epub 2011 May 19.

Abstract

Collision-induced dissociations of protonated (18)O-labeled tetraglycines labeled separately at either the first or the second amide bond established that water loss from the backbone occurs from the N-terminal residue. Density functional theory at B3LYP/6-311++G(d,p) predicted that the low-energy [G(4) + H - H(2)O](+) product ion is an N(1)-protonated 3,5-dihydro-4H-imidazol-4-one. The ion at the lowest energy, III, is 24.8 kcal mol(-1) lower than the protonated oxazole structure, II, proposed by Bythell et al. (J. Phys. Chem A2010, 114, 5076-5082). In addition, structure III has a predicted IR spectrum that provides a better match with the published experimental IRMPD spectrum than that of structure II.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Ions / chemistry
  • Isotope Labeling / methods*
  • Molecular Structure
  • Oligopeptides / chemistry*
  • Quantum Theory*
  • Water / chemistry*

Substances

  • Ions
  • Oligopeptides
  • Water
  • glycyl-glycyl-glycyl-glycine