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Bioinformation. 2011 Apr 22;6(3):125-7.

PKSIIIexplorer: TSVM approach for predicting Type III polyketide synthase proteins.

Abstract

PKSIIIexplorer, a web server based on 'transductive Support Vector Machine' allows fast and reliable prediction of Type III polyketide synthase proteins. It provides a simple unique platform to identify the probability of a particular sequence, being a type III polyketide synthases or not with moderately high accuracy. We hope that our method could serve as a useful program for the type III polyketide researchers. The tool is available at "http://type3pks.in/tsvm/pks3".

ABBREVIATIONS:

PKS - Polyketide synthase, CHS - Chalcone synthase, SVM - Support vector machine, MCC - Matthews Correlation Coefficient.

KEYWORDS:

Chalcone synthase; PKSIIIexplorer; TSVM; Type III polyketide synthase

PMID:
21584189
PMCID:
PMC3089887

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