Format

Send to

Choose Destination
J Am Med Inform Assoc. 2011 May 1;18(3):314-7. doi: 10.1136/jamia.2010.007914. Epub 2011 Jan 24.

R engine cell: integrating R into the i2b2 software infrastructure.

Author information

1
IRCCS Fondazione S. Maugeri, Pavia, Italy.

Abstract

Informatics for Integrating Biology and the Bedside (i2b2) is an initiative funded by the NIH that aims at building an informatics infrastructure to support biomedical research. The University of Pavia has recently integrated i2b2 infrastructure with a registry of inherited arrhythmogenic diseases. Within this project, the authors created a novel i2b2 cell, named R Engine Cell, which allows the communication between i2b2 and the R statistical software. As survival analyses are routinely performed by cardiology researchers, the authors have first concentrated on making Kaplan-Meier analyses available within the i2b2 web interface. To this aim, the authors developed a web-client plug-in to select the patient set on which to perform the analysis and to display the results in a graphical, intuitive way. R Engine Cell has been designed to easily support the integration of other R-based statistical analyses into i2b2.

PMID:
21262924
PMCID:
PMC3078677
DOI:
10.1136/jamia.2010.007914
[Indexed for MEDLINE]
Free PMC Article

Supplemental Content

Full text links

Icon for Silverchair Information Systems Icon for PubMed Central
Loading ...
Support Center